- Add isDirectoryPath helper to lsp-client-wrapper.ts
- Create directory-diagnostics.ts with aggregateDiagnosticsForDirectory
- Update diagnostics-tool.ts with extension parameter for directory paths
- Update Atlas agent prompts to use extension param for directory diagnostics
- Add unit tests for isDirectoryPath and aggregateDiagnosticsForDirectory
Fixes#2362
Align runtime defaults, tests, docs, and generated artifacts with the newer GPT-5.4 baseline. Keep think-mode and prompt-routing expectations consistent after the model version bump.
- fix(hooks): skip todo continuation when agent has pending question (#1888)
Add pending-question-detection module that walks messages backwards
to detect unanswered question tool_use, preventing CONTINUATION_PROMPT
injection while awaiting user response.
- fix(config): allow custom agent names in disabled_agents (#1693)
Change disabled_agents schema from BuiltinAgentNameSchema to z.string()
and add filterDisabledAgents helper in agent-config-handler to filter
user, project, and plugin agents with case-insensitive matching.
- fix(agents): change primary agents mode to 'all' (#1891)
Update Sisyphus, Hephaestus, and Atlas agent modes from 'primary'
to 'all' so they are available for @mention routing and task()
delegation in addition to direct chat.
Add 'gemini' to prompt source types and route Gemini models to new
Gemini-optimized prompts via isGeminiModel detection. Update barrel
exports for all 3 agent modules. All existing tests pass.
Atlas and Sisyphus prompts instructed agents to use background_cancel(all=true)
before final answers. This destroys uncollected background task results and
contradicts existing NEVER directives in the Sisyphus prompt, causing agents
to lose explore/librarian outputs mid-session.
Replace with individual task cancellation pattern that preserves completed
task results while still cleaning up running disposable tasks.
Rewrite Atlas GPT verification from a checklist to a 4-phase protocol:
Phase 1 (Read Code First), Phase 2 (Automated Checks), Phase 3 (Hands-On QA),
Phase 4 (Gate Decision). Hands-on QA is now mandatory for user-facing changes,
not 'if applicable'. Hook message reinforces subagent distrust and requires
actually running deliverables before proceeding to next task.
Remove crash-causing name fields from 6 agent configs (sisyphus, hephaestus,
atlas, metis, momus, prometheus). The name field approach breaks opencode
because Agent.get(agent.name) uses name as lookup key.
Add getAgentConfigKey() to agent-display-names.ts for resolving display names
back to lowercase config keys (e.g. 'Atlas (Plan Executor)' -> 'atlas').
Allow individual categories to be disabled via `disable: true` in
config. Introduce shared `mergeCategories()` utility to centralize
category merging and disabled filtering across all 7 consumption sites.
- VERIFICATION_REMINDER: add Step 2 manual code review (non-negotiable)
- Require Read of EVERY changed file line by line
- Cross-check subagent claims vs actual code
- Verify logic correctness, completeness, edge cases, patterns
- Add Step 5: direct boulder state check via Read plan file
- Count remaining tasks directly, no cached state
- BOULDER_CONTINUATION_PROMPT: add first rule to read plan file immediately
- verification-reminders.ts: restructure steps 5-8 for boulder/todo checks
- Atlas default.ts (Claude): enhance 3.4 QA with A/B/C/D sections
- A: Automated verification
- B: Manual code review (non-negotiable)
- C: Hands-on QA (if applicable)
- D: Check boulder state directly
- Atlas gpt.ts (GPT-5.2): apply same QA enhancements with GPT-optimized structure
- verification_rules: update both Claude and GPT versions with manual review requirements
Addresses issue where Atlas would skip manual code inspection after delegation,
leading to rubber-stamping of broken or incomplete work.
Revert .default([]) on load_skills schema back to required, restore the runtime error for missing load_skills, and add explicit load_skills=[] to all task() examples in agent prompts that were missing it.
Ultraworked with [Sisyphus](https://github.com/code-yeongyu/oh-my-opencode)
Co-authored-by: Sisyphus <clio-agent@sisyphuslabs.ai>
Address review feedback (P3): The User-Installed Skills block was duplicated verbatim in two if/else branches in both buildCategorySkillsDelegationGuide() and Atlas buildSkillsSection(). Extract shared formatCustomSkillsBlock() with configurable header level (#### vs **) so both builders reference a single source of truth.
Ultraworked with [Sisyphus](https://github.com/code-yeongyu/oh-my-opencode)
Co-authored-by: Sisyphus <clio-agent@sisyphuslabs.ai>
Atlas had its own buildSkillsSection() in atlas/utils.ts that rendered all skills in a flat table without distinguishing built-in from user-installed. Apply the same HIGH PRIORITY emphasis and CRITICAL warning pattern used in the shared prompt builder.
Ultraworked with [Sisyphus](https://github.com/code-yeongyu/oh-my-opencode)
Co-authored-by: Sisyphus <clio-agent@sisyphuslabs.ai>
Split monolithic atlas.ts into modular structure: index.ts (routing), default.ts (Claude-optimized), gpt.ts (GPT-optimized), utils.ts (shared utilities). Atlas now routes to appropriate prompt based on model type instead of overriding model settings.
Ultraworked with [Sisyphus](https://github.com/code-yeongyu/oh-my-opencode)
Co-authored-by: Sisyphus <clio-agent@sisyphuslabs.ai>
YeonGyu-Kim