fix(tool-execute-after): gate metadata recovery warnings

Root cause: tool.execute.after attempted metadata recovery for every tool, including built-in tools that never publish recoverable OMO metadata. On Windows this produced repeated recovery warnings across read/bash/glob/grep/todowrite/lsp/apply_patch and amplified stalled-session diagnostics, while metadata-linked tools still needed diagnostic visibility when their linkage was stale.

Limit the warning to tools expected to publish recoverable metadata and keep all other built-in tools fail-open after missing metadata.

Fixes #4449

Ultraworked with [Sisyphus](https://github.com/code-yeongyu/oh-my-openagent)

Co-authored-by: Sisyphus <clio-agent@sisyphuslabs.ai>

src/plugin/tool-execute-after-metadata-recovery.test.ts

@@ -0,0 +1,83 @@
+/// <reference types="bun-types" />
+
+import { beforeEach, describe, expect, it } from "bun:test"
+import { existsSync, mkdtempSync, readFileSync, rmSync } from "node:fs"
+import { tmpdir } from "node:os"
+import { join } from "node:path"
+
+import { clearPendingStore } from "../features/tool-metadata-store"
+import { _flushForTesting, _resetLoggerForTesting, _setLoggerForTesting } from "../shared/logger"
+import { createToolExecuteAfterHandler } from "./tool-execute-after"
+
+function readLogIfPresent(filePath: string): string {
+  return existsSync(filePath) ? readFileSync(filePath, "utf8") : ""
+}
+
+describe("createToolExecuteAfterHandler metadata recovery", () => {
+  beforeEach(() => {
+    clearPendingStore()
+    _resetLoggerForTesting()
+  })
+
+  it("#given builtin tool has no recoverable metadata #when tool.execute.after runs #then it fails open without warning spam", async () => {
+    // given
+    const logDir = mkdtempSync(join(tmpdir(), "omo-tool-after-"))
+    const logPath = join(logDir, "omo.log")
+    _setLoggerForTesting({ filePath: logPath })
+    const handler = createToolExecuteAfterHandler({
+      ctx: { directory: "/repo" } as never,
+      hooks: {} as never,
+    })
+    const output = { title: "result", output: "read output", metadata: {} }
+
+    try {
+      // when
+      await handler(
+        { tool: "read", sessionID: "ses_parent", callID: "call_read" },
+        output,
+      )
+      _flushForTesting()
+
+      // then
+      expect(output).toEqual({ title: "result", output: "read output", metadata: {} })
+      expect(readLogIfPresent(logPath)).not.toContain("Unable to recover stored metadata")
+    } finally {
+      _resetLoggerForTesting()
+      rmSync(logDir, { force: true, recursive: true })
+    }
+  })
+
+  it("#given metadata-linked tool has stale metadata #when tool.execute.after runs #then it warns and still completes hooks", async () => {
+    // given
+    const logDir = mkdtempSync(join(tmpdir(), "omo-tool-after-"))
+    const logPath = join(logDir, "omo.log")
+    _setLoggerForTesting({ filePath: logPath })
+    let hookRan = false
+    const handler = createToolExecuteAfterHandler({
+      ctx: { directory: "/repo" } as never,
+      hooks: {
+        categorySkillReminder: {
+          "tool.execute.after": async () => {
+            hookRan = true
+          },
+        },
+      } as never,
+    })
+
+    try {
+      // when
+      await handler(
+        { tool: "task", sessionID: "ses_parent", callID: "call_missing" },
+        { title: "result", output: "task output", metadata: {} },
+      )
+      _flushForTesting()
+
+      // then
+      expect(hookRan).toBe(true)
+      expect(readLogIfPresent(logPath)).toContain("Unable to recover stored metadata")
+    } finally {
+      _resetLoggerForTesting()
+      rmSync(logDir, { force: true, recursive: true })
+    }
+  })
+})

src/plugin/tool-execute-after.ts

@@ -6,6 +6,15 @@ import type { PluginContext } from "./types"
 
 const VERIFICATION_ATTEMPT_PATTERN = /<ulw_verification_attempt_id>(.*?)<\/ulw_verification_attempt_id>/i
 
+const METADATA_LINKED_TOOLS = new Set([
+  "background_output",
+  "background_task",
+  "call_omo_agent",
+  "edit",
+  "hashline_edit",
+  "task",
+])
+
 type ToolExecuteAfterInput = {
   readonly tool: string
   readonly sessionID: string
@@ -40,6 +49,10 @@ function getPluginDirectory(ctx: PluginContext): string | null {
   return null
 }
 
+function expectsRecoverableMetadata(tool: string): boolean {
+  return METADATA_LINKED_TOOLS.has(tool)
+}
+
 export function createToolExecuteAfterHandler(args: {
   ctx: PluginContext
   hooks: CreatedHooks
@@ -84,7 +97,7 @@ export function createToolExecuteAfterHandler(args: {
           output.metadata = { ...output.metadata, ...stored.metadata }
         }
       }
-    } else if (!nativeSessionId) {
+    } else if (!nativeSessionId && expectsRecoverableMetadata(input.tool)) {
       log("[tool-execute-after] Unable to recover stored metadata and no native session linkage was present", {
         tool: input.tool,
         sessionID: input.sessionID,