buildShellAwareGitPrefix incorrectly returned raw bash VAR=value prefix for csh, which does not support inline env assignment. Now routes csh through buildEnvPrefix() to emit setenv syntax. Also sets code block lang to csh and skips bash block regex prefixing for csh.
Ultraworked with [Sisyphus](https://github.com/code-yeongyu/oh-my-openagent)
Co-authored-by: Sisyphus <clio-agent@sisyphuslabs.ai>
Mirrors the agent-config-handler change: command-config-handler now also discovers skills from host config.skills.paths set by other plugins, making them available as slash commands.
Ultraworked with [Sisyphus](https://github.com/code-yeongyu/oh-my-openagent)
Co-authored-by: Sisyphus <clio-agent@sisyphuslabs.ai>
When another plugin (e.g. superpowers) injects skill directories via config.skills.paths in the config hook, the agent-config-handler now discovers those skills via a second discoverConfigSourceSkills call using the adapted host config. Fixes#3396.
Ultraworked with [Sisyphus](https://github.com/code-yeongyu/oh-my-openagent)
Co-authored-by: Sisyphus <clio-agent@sisyphuslabs.ai>
Converts the host OpenCode config.skills object (with paths/urls arrays set by other plugins like superpowers) into the SkillsConfig format used by discoverConfigSourceSkills. Filters blank/whitespace entries and non-string values.
Ultraworked with [Sisyphus](https://github.com/code-yeongyu/oh-my-openagent)
Co-authored-by: Sisyphus <clio-agent@sisyphuslabs.ai>
The previous code read params.config.default_agent which is always populated to
"Sisyphus - Ultraworker" by existing logic (lines 196-204) even when the user
never configured default_agent. This silently overrode any custom agent_order.
Now we gate on configuredDefaultAgent (the user's explicit value) so the sort
shim rank map is only mutated when the user actually set default_agent.
Add regression test: agent_order without default_agent must preserve order.
Ultraworked with [Sisyphus](https://github.com/code-yeongyu/oh-my-openagent)
Co-authored-by: Sisyphus <clio-agent@sisyphuslabs.ai>
Raise test token counts from 170K/180K to 800K/810K so compaction triggers at 78% of 1M instead of 78% of 200K, matching the actual GA context limit for 4.6 models.
Ultraworked with [Sisyphus](https://github.com/code-yeongyu/oh-my-openagent)
Co-authored-by: Sisyphus <clio-agent@sisyphuslabs.ai>
Anthropic made the 1M context window GA for Opus 4.6, Sonnet 4.6, and 4.7 models on March 13, 2026 — no beta header required. The resolver was still falling back to 200K when no modelContextLimitsCache entry existed, causing premature compaction and over-truncation.
Ultraworked with [Sisyphus](https://github.com/code-yeongyu/oh-my-openagent)
Co-authored-by: Sisyphus <clio-agent@sisyphuslabs.ai>
Use detectShellType() and buildEnvPrefix() from src/shared/shell-env.ts instead of hardcoding bash-only VAR=value syntax. PowerShell users get $env:VAR='value'; cmd users get set VAR="value" &&; unix/Git Bash users keep VAR=value. Skips injecting non-bash prefixes into bash code blocks to avoid syntax mismatch.
Reland of #3214 (ekkoitac) which had unresolvable CLA + used custom shell detection instead of the shared utility.
Ultraworked with [Sisyphus](https://github.com/code-yeongyu/oh-my-openagent)
Co-authored-by: ekkoitac <lobster@example.com>
Co-authored-by: Sisyphus <clio-agent@sisyphuslabs.ai>
Switch from query-param (?exaApiKey=...) to Authorization: Bearer header
for Exa MCP authentication. The MCP SDK's SSE endpoint resolution discards
query parameters when the server replies with a relative path, causing
EXA_API_KEY to be silently lost and falling back to rate-limited free tier.
Bearer auth via header survives URL resolution and is consistent with the
Tavily MCP config pattern already in use.
Fixes#3763
Relands #4090 (CLA unsigned by original author)
Ultraworked with [Sisyphus](https://github.com/code-yeongyu/oh-my-openagent)
Co-authored-by: Minsoo Choi <Neo1228@users.noreply.github.com>
Co-authored-by: Sisyphus <clio-agent@sisyphuslabs.ai>
Address Oracle review feedback: refactor 4 aliased mutations via argsObject
in plugin/tool-execute-before.ts and 1 via toolOutput in atlas/tool-execute-before.ts.
Strengthen audit test regex to catch Output.args mutations regardless of the
variable name prefix (toolOutput, argsObject aliases).
Ultraworked with [Sisyphus](https://github.com/code-yeongyu/oh-my-openagent)
Co-authored-by: Sisyphus <clio-agent@sisyphuslabs.ai>
Add replace-tool-args.audit.test.ts that scans src/**/*.ts for direct
output.args property assignments and Object.assign(output.args, ...) outside
the helper. Also fix the 9th mutation site discovered by the audit in
compaction-todo-preserver/hook.ts.
Add replace-tool-args.test.ts with 12 regression tests covering both mutable
and Object.freeze'd output.args scenarios for all hook patterns.
Ultraworked with [Sisyphus](https://github.com/code-yeongyu/oh-my-openagent)
Co-authored-by: Sisyphus <clio-agent@sisyphuslabs.ai>
Replace output.args.command and output.args.prompt direct assignments
with replaceToolArgs() in non-interactive-env, prometheus-md-only,
and sisyphus-junior-notepad hooks.
Ultraworked with [Sisyphus](https://github.com/code-yeongyu/oh-my-openagent)
Co-authored-by: Sisyphus <clio-agent@sisyphuslabs.ai>
YeonGyu-Kim